| Mile Post | Station |
| Type of operation | Siding length |
| 4.2 | 10th St (Desert Yard) | Crossover | 2MT CTC | Yard |
| 4.6 | West Oakland |
| Yard | |
| 5.8 | Magnolia (OT Jct) | Junction, Crossover |
| |
| 6.3 | South Oakland |
| Yard | |
| 6.4 | King St | Passenger stop |
| |
| 6.8 | N. Jack London (Track 2) |
|
| |
| 7.0 | Jack London | Crossover |
| |
| 7.3 | S. Jack London (Track 2) |
|
| |
| 7.6 | Strong | Crossover | DT ABS |
|
| 8.3 | East Oakland |
| Yard | |
| 9.7 | Fruitvale | Junction |
| |
| 1.4 | Melrose (Oakland Sub) | Junction |
| |
| 12.4 |
|
|
| |
| 13.5 | North Elmhurst | Junction, Crossover | 2MT CTC |
|
| 13.7 | South Elmhurst |
| CTC |
|
| 14.8 | San Leandro |
|
| |
| 15.5 | Estudillo |
|
| |
| 17.6 | San Lorenzo |
|
| |
| 20.1 | Hayward | Passenger stop | 11263 | |
| 23.1 |
|
|
| |
| 26.6 | Decoto |
|
| |
| 29.3 | Niles |
|
| |
| 29.7 | Niles Jct (UP Xing) | Junction, Manual interlocking, Wye |
| |
| 30.1 | Shinn |
| 2MT CTC |
|
| 31.7 | Centerville |
|
| |
| 32.0 | Freemont | Passenger stop |
| |
| 34.5 | Cherry | Junction, Wye, Crossover |
| |
| 34.9 | North Newark | Junction, Wye |
|
Detector